Calculate 4 Key Reporting Measures

Perform calculations for the WHO International Reference Reagents for the microbiome. Using strain, species or genera abundance tables generated through analysis of 16S ribosomal RNA sequencing or shotgun sequencing which included a reference reagent. This package will calculate measures of sensitivity, False positive relative abundance, diversity, and similarity based on mean average abundances with respect to the reference reagent.


Reference manual

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install.packages("microbiomeMQC")

1.0.2 by Jacob Dehinsilu, 2 years ago


Browse source code at https://github.com/cran/microbiomeMQC


Authors: Jacob Dehinsilu [aut, cre] , Ravneet Bhuller [aut]


Documentation:   PDF Manual  


GPL-3 license


Imports readxl, vegan

Suggests testthat, knitr, rmarkdown


See at CRAN