Fast Multivariate Analyses of Big Genomic Data

Fast computation of multivariate analyses of small (10s to 100s markers) to big (1000s to 100000s) genotype data. Runs Principal Component Analysis allowing for centering, z-score standardization and scaling for genetic drift, projection of ancient samples to modern genetic space and multivariate tests for differences in group location (Permutation-Based Multivariate Analysis of Variance) and dispersion (Permutation-Based Multivariate Analysis of Dispersion).


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install.packages("smartsnp")

1.1.0 by Christian Huber, 7 months ago


Browse source code at https://github.com/cran/smartsnp


Authors: Salvador Herrando-Perez [aut] , Ray Tobler [ctb] , Christian Huber [ctb, cre]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports bootSVD, data.table, foreach, Rfast, RSpectra, vegan, vroom, Rcpp

Linking to Rcpp, RcppArmadillo


See at CRAN