Data Structures for Single Cell Data

Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) , Macosko E, Basu A, Satija R, et al (2015) , and Stuart T, Butler A, et al (2019) for more details.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("SeuratObject")

4.0.2 by Paul Hoffman, 3 months ago


https://satijalab.org/seurat, https://github.com/mojaveazure/seurat-object


Report a bug at https://github.com/mojaveazure/seurat-object/issues


Browse source code at https://github.com/cran/SeuratObject


Authors: Rahul Satija [aut] , Andrew Butler [aut] , Paul Hoffman [aut, cre] , Tim Stuart [aut] , Jeff Farrell [ctb] , Shiwei Zheng [ctb] , Christoph Hafemeister [ctb] , Patrick Roelli [ctb] , Yuhan Hao [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports grDevices, grid, Matrix, methods, Rcpp, rlang, stats, tools, utils

Suggests testthat

Linking to Rcpp, RcppEigen


Imported by Seurat, Signac.

Depended on by tidyseurat.

Suggested by VAM, singleCellHaystack.


See at CRAN