Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


5.0.2 by Rahul Satija, 3 months ago,

Report a bug at

Browse source code at

Authors: Paul Hoffman [aut] , Rahul Satija [aut, cre] , David Collins [aut] , Yuhan Hao [aut] , Austin Hartman [aut] , Gesmira Molla [aut] , Andrew Butler [aut] , Tim Stuart [aut] , Madeline Kowalski [ctb] , Saket Choudhary [ctb] , Skylar Li [ctb] , Longda Jiang [ctb] , Jeff Farrell [ctb] , Shiwei Zheng [ctb] , Christoph Hafemeister [ctb] , Patrick Roelli [ctb]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports future, future.apply, grDevices, grid, Matrix, methods, progressr, Rcpp, rlang, stats, tools, utils, spam, lifecycle, generics

Depends on sp

Suggests DelayedArray, fs, ggplot2, HDF5Array, rmarkdown, testthat, BPCells, sf

Enhances Seurat

Linking to Rcpp, RcppEigen

Imported by APackOfTheClones, CAMML, SCIntRuler, Signac, bbknnR, scAnnotate, scCustomize, scaper, scpoisson.

Depended on by Seurat, tidyseurat.

Suggested by CytoSimplex, RESET, SCpubr, SPECK, SpaTopic, VAM, cellpypes, rliger, scOntoMatch, singleCellHaystack.

See at CRAN