Reference manual

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install.packages("harmony")

2.0.2 by Ilya Korsunsky, 15 hours ago


https://github.com/immunogenomics/harmony, https://pati-ni.github.io/harmony/


Browse source code at https://github.com/cran/harmony


Authors: Nikolaos Patikas [aut, ctb] (ORCID: , Hongcheng Yao [aut, ctb] (ORCID: , Ilya Korsunsky [cre, aut] (ORCID: , Martin Hemberg [aut] , Nghia Millard [aut] , Jean Fan [aut, ctb] , Kamil Slowikowski [aut, ctb] (ORCID: , Miles Smith [ctb] , Soumya Raychaudhuri [aut] (ORCID:


Documentation:   PDF Manual  


GPL-3 license


Imports dplyr, cowplot, ggplot2, Matrix, methods, tibble, rlang, RhpcBLASctl, cli

Depends on Rcpp

Suggests SingleCellExperiment, Seurat, testthat, knitr, rmarkdown, ggthemes, ggrepel, patchwork, tidyverse, tidyr, data.table

Linking to Rcpp, RcppArmadillo, RcppProgress


Imported by PRECAST, ProFAST, RaceID, SCdeconR, scAnnotate, symphony.

Suggested by Seurat.


See at CRAN