Fast, Sensitive, and Accurate Integration of Single Cell Data

Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al . Package includes a standalone Harmony function and interfaces to external frameworks.


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install.packages("harmony")

0.1.0 by Ilya Korsunsky, 19 days ago


software.broadinstitute.org/harmony


Browse source code at https://github.com/cran/harmony


Authors: Ilya Korsunsky [cre, aut] , Nghia Millard [aut] , Jean Fan [aut, ctb] , Kamil Slowikowski [aut, ctb] , Miles Smith [ctb] , Soumya Raychaudhuri [aut]


Documentation:   PDF Manual  


GPL-3 license


Imports dplyr, cowplot, tidyr, ggplot2, irlba, Matrix, methods, tibble, rlang

Depends on Rcpp

Suggests Seurat, testthat, knitr, rmarkdown

Linking to Rcpp, RcppArmadillo, RcppProgress


Suggested by bcTSNE.


See at CRAN