harmony

Fast, Sensitive, and Accurate Integration of Single Cell Data

Implementation of the Harmony algorithm for single cell integration, described in Patikas, Yao, et al. . Package includes a standalone Harmony function and interfaces to external frameworks.

Reference manual

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install.packages("harmony")

2.0.5 by Ilya Korsunsky, 4 months ago

https://github.com/immunogenomics/harmony, https://pati-ni.github.io/harmony/

Browse source code at https://github.com/cran/harmony

Authors: Nikolaos Patikas [aut, ctb] (ORCID: , Hongcheng Yao [aut, ctb] (ORCID: , Ilya Korsunsky [cre, aut] (ORCID: , Martin Hemberg [aut] , Nghia Millard [aut] , Jean Fan [aut, ctb] , Kamil Slowikowski [aut, ctb] (ORCID: , Miles Smith [ctb] , Soumya Raychaudhuri [aut] (ORCID:

Documentation:   PDF Manual  

GPL-3 license

Imports dplyr, cowplot, ggplot2, Matrix, methods, tibble, rlang, RhpcBLASctl, cli

Depends on Rcpp

Suggests SingleCellExperiment, Seurat, testthat, knitr, rmarkdown, ggthemes, ggrepel, patchwork, tidyverse, tidyr, data.table

Linking to Rcpp, RcppArmadillo, RcppProgress

Imported by RaceID, SCIntRuler.

Suggested by ProFAST, Seurat.

See at CRAN

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