Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al . Package includes a standalone Harmony function and interfaces to external frameworks.
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0.1.0 by Ilya Korsunsky, 7 months ago
software.broadinstitute.org/harmony
Browse source code at https://github.com/cran/harmony
Authors: Ilya Korsunsky [cre, aut] , Nghia Millard [aut] , Jean Fan [aut, ctb] , Kamil Slowikowski [aut, ctb] , Miles Smith [ctb] , Soumya Raychaudhuri [aut]
Documentation: PDF Manual
GPL-3 license
Imports dplyr, cowplot, tidyr, ggplot2, irlba, Matrix, methods, tibble, rlang
Depends on Rcpp
Suggests Seurat, testthat, knitr, rmarkdown
Linking to Rcpp, RcppArmadillo, RcppProgress
Imported by symphony.
Suggested by Platypus, bcTSNE.
See at CRAN