Fast, Sensitive, and Accurate Integration of Single Cell Data

Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al . Package includes a standalone Harmony function and interfaces to external frameworks.


Reference manual

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0.1.0 by Ilya Korsunsky, 7 months ago

Browse source code at

Authors: Ilya Korsunsky [cre, aut] , Nghia Millard [aut] , Jean Fan [aut, ctb] , Kamil Slowikowski [aut, ctb] , Miles Smith [ctb] , Soumya Raychaudhuri [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports dplyr, cowplot, tidyr, ggplot2, irlba, Matrix, methods, tibble, rlang

Depends on Rcpp

Suggests Seurat, testthat, knitr, rmarkdown

Linking to Rcpp, RcppArmadillo, RcppProgress

Imported by symphony.

Suggested by Platypus, bcTSNE.

See at CRAN