Fast, Sensitive, and Accurate Integration of Single Cell Data

Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al . Package includes a standalone Harmony function and interfaces to external frameworks.


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install.packages("harmony")

0.1.0 by Ilya Korsunsky, 4 months ago


software.broadinstitute.org/harmony


Browse source code at https://github.com/cran/harmony


Authors: Ilya Korsunsky [cre, aut] , Nghia Millard [aut] , Jean Fan [aut, ctb] , Kamil Slowikowski [aut, ctb] , Miles Smith [ctb] , Soumya Raychaudhuri [aut]


Documentation:   PDF Manual  


GPL-3 license


Imports dplyr, cowplot, tidyr, ggplot2, irlba, Matrix, methods, tibble, rlang

Depends on Rcpp

Suggests Seurat, testthat, knitr, rmarkdown

Linking to Rcpp, RcppArmadillo, RcppProgress


Imported by symphony.

Suggested by bcTSNE.


See at CRAN