Fast, Sensitive, and Accurate Integration of Single Cell Data

Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al . Package includes a standalone Harmony function and interfaces to external frameworks.


Reference manual

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0.1.0 by Ilya Korsunsky, 19 days ago

Browse source code at

Authors: Ilya Korsunsky [cre, aut] , Nghia Millard [aut] , Jean Fan [aut, ctb] , Kamil Slowikowski [aut, ctb] , Miles Smith [ctb] , Soumya Raychaudhuri [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports dplyr, cowplot, tidyr, ggplot2, irlba, Matrix, methods, tibble, rlang

Depends on Rcpp

Suggests Seurat, testthat, knitr, rmarkdown

Linking to Rcpp, RcppArmadillo, RcppProgress

Suggested by bcTSNE.

See at CRAN