Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling

Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) < https://psb.stanford.edu/psb-online/proceedings/psb22/schiebout.pdf>.


Reference manual

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0.1.1 by Courtney Schiebout, a month ago

Browse source code at https://github.com/cran/CAMML

Authors: H. Robert Frost [aut] , Courtney Schiebout [aut, cre]

Documentation:   PDF Manual  

GPL (>= 2) license

Imports VAM, Seurat, MASS, Matrix, dplyr, utils, edgeR, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi, SeuratObject

Suggests sctransform

See at CRAN