Single Cell mRNA Soup eXterminator

Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) .


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install.packages("SoupX")

1.4.5 by Matthew Daniel Young, 4 months ago


https://github.com/constantAmateur/SoupX


Browse source code at https://github.com/cran/SoupX


Authors: Matthew Daniel Young


Documentation:   PDF Manual  


GPL-2 license


Imports ggplot2, Matrix, methods, Seurat

Suggests knitr, rstan, DropletUtils, rmarkdown


See at CRAN