Single Cell mRNA Soup eXterminator

Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) .


Reference manual

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1.5.2 by Matthew Daniel Young, 8 months ago

Browse source code at

Authors: Matthew Daniel Young

Documentation:   PDF Manual  

GPL-2 license

Imports ggplot2, Matrix, methods, Seurat

Suggests knitr, rstan, DropletUtils, rmarkdown, formatR

See at CRAN