An 'Shiny' App for Exploring scRNA-seq Data Processed in 'Seurat'

A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.

Reference manual

install.packages("SeuratExplorer")

0.1.8 by Yongchao Zhang, 2 months ago

https://CRAN.R-project.org/package=SeuratExplorer, https://github.com/fentouxungui/SeuratExplorer

Report a bug at https://github.com/fentouxungui/SeuratExplorer/issues

Browse source code at https://github.com/cran/SeuratExplorer

Authors: Yongchao Zhang [aut, cre] (https://github.com/fentouxungui)

Documentation: PDF Manual

GPL (>= 3) license

Imports utils, tools, stats, methods, Seurat, SeuratObject, ggplot2, shinydashboard, DT, shinycssloaders, colourpicker, shinyWidgets, scales, shinyjqui, shinyBS, ggalluvial, dplyr, qs2, circlize, reshape2, knitr, markdown, shinyjs, rlang

Depends on shiny

Suggests ComplexHeatmap, patchwork, MAST, limma, DESeq2, Signac

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