Reference manual

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install.packages("rliger")

1.0.1 by Yichen Wang, 4 months ago


https://github.com/welch-lab/liger


Report a bug at https://github.com/welch-lab/liger/issues


Browse source code at https://github.com/cran/rliger


Authors: Joshua Welch [aut, ctb] , Chao Gao [aut, ctb] , Jialin Liu [aut, ctb] , Joshua Sodicoff [aut, ctb] , Velina Kozareva [aut, ctb] , Evan Macosko [aut, ctb] , Yichen Wang [aut, ctb, cre] , Paul Hoffman [ctb] , Ilya Korsunsky [ctb] , Robert Lee [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports Rcpp, plyr, FNN, dplyr, grid, ggrepel, irlba, ica, Rtsne, ggplot2, foreach, parallel, doParallel, mclust, psych, RANN, uwot, rlang, hdf5r, scattermore, patchwork, cowplot

Depends on Matrix, methods, stats, utils

Suggests Seurat, SeuratObject, knitr, reticulate, rmarkdown, testthat, GenomicRanges, S4Vectors, IRanges, org.Hs.eg.db, reactome.db, fgsea, AnnotationDbi

Linking to Rcpp, RcppArmadillo, RcppEigen, RcppProgress


Suggested by scCustomize.


See at CRAN