Reference manual

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install.packages("rliger")

2.0.1 by Yichen Wang, 3 months ago


https://welch-lab.github.io/liger/


Report a bug at https://github.com/welch-lab/liger/issues


Browse source code at https://github.com/cran/rliger


Authors: Joshua Welch [aut] , Yichen Wang [aut, cre] , Chao Gao [aut] , Jialin Liu [aut] , Joshua Sodicoff [aut, ctb] , Velina Kozareva [aut, ctb] , Evan Macosko [aut, ctb] , Paul Hoffman [ctb] , Ilya Korsunsky [ctb] , Robert Lee [ctb] , Andrew Robbins [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports circlize, cli, cowplot, ComplexHeatmap, dplyr, ggplot2, grid, hdf5r, leidenAlg, lifecycle, magrittr, Matrix, RANN, RColorBrewer, Rcpp, rlang, Rtsne, S4Vectors, scales, uwot, viridis

Depends on methods, stats, utils

Suggests AnnotationDbi, DESeq2, DoubletFinder, EnhancedVolcano, fgsea, GenomicRanges, ggrepel, gprofiler2, IRanges, knitr, org.Hs.eg.db, plotly, psych, RcppPlanc, reactome.db, rmarkdown, sankey, scattermore, Seurat, SeuratObject, SingleCellExperiment, SummarizedExperiment, testthat

Linking to Rcpp, RcppArmadillo, RcppProgress


Suggested by scCustomize.


See at CRAN