Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


2.0.1 by Yichen Wang, 3 months ago

Report a bug at

Browse source code at

Authors: Joshua Welch [aut] , Yichen Wang [aut, cre] , Chao Gao [aut] , Jialin Liu [aut] , Joshua Sodicoff [aut, ctb] , Velina Kozareva [aut, ctb] , Evan Macosko [aut, ctb] , Paul Hoffman [ctb] , Ilya Korsunsky [ctb] , Robert Lee [ctb] , Andrew Robbins [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports circlize, cli, cowplot, ComplexHeatmap, dplyr, ggplot2, grid, hdf5r, leidenAlg, lifecycle, magrittr, Matrix, RANN, RColorBrewer, Rcpp, rlang, Rtsne, S4Vectors, scales, uwot, viridis

Depends on methods, stats, utils

Suggests AnnotationDbi, DESeq2, DoubletFinder, EnhancedVolcano, fgsea, GenomicRanges, ggrepel, gprofiler2, IRanges, knitr,, plotly, psych, RcppPlanc, reactome.db, rmarkdown, sankey, scattermore, Seurat, SeuratObject, SingleCellExperiment, SummarizedExperiment, testthat

Linking to Rcpp, RcppArmadillo, RcppProgress

Suggested by scCustomize.

See at CRAN