Biological Sequences Retrieval and Analysis

Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Seqinr includes utilities for sequence data management under the ACNUC system described in Gouy, M. et al. (1984) Nucleic Acids Res. 12:121-127 .


Reference manual

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install.packages("seqinr")

4.2-4 by Simon Penel, 21 days ago


http://seqinr.r-forge.r-project.org/


Report a bug at http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/seqinr-forum


Browse source code at https://github.com/cran/seqinr


Authors: Delphine Charif [aut] , Olivier Clerc [ctb] , Carolin Frank [ctb] , Jean R. Lobry [aut, cph] , Anamaria Necşulea [ctb] , Leonor Palmeira [ctb] , Simon Penel [cre] , Guy Perrière [ctb]


Documentation:   PDF Manual  


Task views: Statistical Genetics


GPL (>= 2) license


Imports ade4, segmented

System requirements: zlib headers and library.


Imported by AmyloGram, AnnotationBustR, BALCONY, CONDOP, CovidMutations, HextractoR, LncFinder, MAGNAMWAR, PTXQC, aLFQ, aaSEA, adegenet, alakazam, beautier, caRpools, coil, cooccurNet, debar, deepredeff, effectR, evobiR, gkmSVM, gquad, hoardeR, insect, ips, metacoder, prozor, selac, shazam, signalHsmm, vhcub.

Depended on by Autoplotprotein, CNOGpro, DCODE, EnsCat, LSPFP, SMM, mlgt, plotprotein.

Suggested by SimRAD, biomartr, cubfits, dartR, phangorn, vhica.

Enhanced by spgs.


See at CRAN