Biological Sequences Retrieval and Analysis

Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Seqinr includes utilities for sequence data management under the ACNUC system described in Gouy, M. et al. (1984) Nucleic Acids Res. 12:121-127 .

Reference manual

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4.2-4 by Simon Penel, 21 days ago

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Browse source code at

Authors: Delphine Charif [aut] , Olivier Clerc [ctb] , Carolin Frank [ctb] , Jean R. Lobry [aut, cph] , Anamaria Necşulea [ctb] , Leonor Palmeira [ctb] , Simon Penel [cre] , Guy Perrière [ctb]

Documentation:   PDF Manual  

Task views: Statistical Genetics

GPL (>= 2) license

Imports ade4, segmented

System requirements: zlib headers and library.

Imported by AmyloGram, AnnotationBustR, BALCONY, CONDOP, CovidMutations, HextractoR, LncFinder, MAGNAMWAR, PTXQC, aLFQ, aaSEA, adegenet, alakazam, beautier, caRpools, coil, cooccurNet, debar, deepredeff, effectR, evobiR, gkmSVM, gquad, hoardeR, insect, ips, metacoder, prozor, selac, shazam, signalHsmm, vhcub.

Depended on by Autoplotprotein, CNOGpro, DCODE, EnsCat, LSPFP, SMM, mlgt, plotprotein.

Suggested by SimRAD, biomartr, cubfits, dartR, phangorn, vhica.

Enhanced by spgs.

See at CRAN