Interface to 'NetMHCIIpan'

The field of immunology benefits from software that can predict which peptide sequences trigger an immune response. 'NetMHCIIpan' is a such a tool: it predicts the binding strength of a short peptide to a Major Histocompatibility Complex class II (MHC-II) molecule. 'NetMHCIIpan' can be used from a web server at < https://services.healthtech.dtu.dk/service.php?NetMHCIIpan-3.2/> or from the command-line, using a local installation. This package allows to call 'NetMHCIIpan' from R.


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Reference manual

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install.packages("netmhc2pan")

1.3.1 by Richèl J.C. Bilderbeek, 15 days ago


https://github.com/richelbilderbeek/netmhc2pan/


Report a bug at https://github.com/richelbilderbeek/netmhc2pan/issues


Browse source code at https://github.com/cran/netmhc2pan


Authors: Richèl J.C. Bilderbeek [aut, cre] , Byungkuk Min [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports assertive, devtools, dplyr, rappdirs, readr, seqinr, stringr, testit, tibble

Suggests knitr, rmarkdown, testthat, spelling

System requirements: NetMHC2pan (https://services.healthtech.dtu.dk/service.php?NetMHCIIpan-3.2)


See at CRAN