Gapped-Kmer Support Vector Machine

Imports the 'gkmSVM' v2.0 functionalities into R < http://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms.


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Reference manual

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install.packages("gkmSVM")

0.79.0 by Mahmoud Ghandi, a year ago


Browse source code at https://github.com/cran/gkmSVM


Authors: Mahmoud Ghandi


Documentation:   PDF Manual  


GPL (>= 2) license


Imports kernlab, seqinr, utils, ROCR, BiocGenerics, IRanges, S4Vectors, Rcpp, grDevices, graphics, stats, Biostrings, GenomeInfoDb, GenomicRanges, rtracklayer

Suggests BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked

Linking to Rcpp

System requirements: C++11


See at CRAN