Gapped-Kmer Support Vector Machine

Imports the 'gkmSVM' v2.0 functionalities into R <> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms.


Reference manual

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0.79.0 by Mahmoud Ghandi, a year ago

Browse source code at

Authors: Mahmoud Ghandi

Documentation:   PDF Manual  

GPL (>= 2) license

Imports kernlab, seqinr, utils, ROCR, BiocGenerics, IRanges, S4Vectors, Rcpp, grDevices, graphics, stats, Biostrings, GenomeInfoDb, GenomicRanges, rtracklayer

Suggests BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked

Linking to Rcpp

System requirements: C++11

See at CRAN