Gapped-Kmer Support Vector Machine

Imports the 'gkmSVM' v2.0 functionalities into R < http://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms. Users should note that the suggested packages 'rtracklayer', 'GenomicRanges', 'BSgenome', 'BiocGenerics', 'Biostrings', 'GenomeInfoDb', 'IRanges', and 'S4Vectors' are all BioConductor packages < https://bioconductor.org>.


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install.packages("gkmSVM")

0.81.0 by Mike Beer, 8 months ago


Browse source code at https://github.com/cran/gkmSVM


Authors: Mahmoud Ghandi


Documentation:   PDF Manual  


GPL (>= 2) license


Imports kernlab, seqinr, utils, ROCR, Rcpp, grDevices, graphics, stats

Suggests rtracklayer, GenomicRanges, BSgenome, BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors

Linking to Rcpp

System requirements: C++11


See at CRAN