Predicts amyloid proteins using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.
AmyloGram predicts presence of signal peptides in eukaryotic proteins using hidden semi-Markov models. The implemented algorithm can be accessed as a web-based service www.smorfland.uni.wroc.pl/AmyloGram
AmyloGram can be also used locally as the R package. It can be installed from CRAN using:
You can install the latest development version of the code using the
devtools R package.
After installation GUI can be accessed locally:
Predictions might be also made in the batch mode: