Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices

Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the API.


Reference manual

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0.9.4-2 by Daniel Fischer, 2 years ago

Browse source code at

Authors: Daniel Fischer [aut, cre] , Anu Sironen [aut]

Documentation:   PDF Manual  

Task views:

GPL (>= 2) license

Imports bamsignals, Biostrings, data.table, GenomicRanges, GenomicTools.fileHandler, httr, IRanges, KernSmooth, knitr, MASS, R.utils, RCurl, rmarkdown, Rsamtools, S4Vectors, seqinr, stringr, XML

See at CRAN