Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019)

A feasible framework for mutation analysis and reverse transcription polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including mutation profile visualization, statistics and mutation ratio of each assay. The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in large-sized samples. Mercatelli, D. and Giorgi, F. M. (2020) .


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Reference manual

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install.packages("CovidMutations")

0.1.3 by Shaoqian Ma, a month ago


https://github.com/MSQ-123/CovidMutations


Report a bug at https://github.com/MSQ-123/CovidMutations/issues


Browse source code at https://github.com/cran/CovidMutations


Authors: Shaoqian Ma [aut, cre] , Yongyou Zhang [aut]


Documentation:   PDF Manual  


Artistic-2.0 license


Imports ggplot2, cowplot, seqinr, stringr, grDevices, graphics, utils, ggpubr, dplyr, VennDiagram

Suggests testthat


See at CRAN