Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019)

A feasible framework for mutation analysis and reverse transcription polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including mutation profile visualization, statistics and mutation ratio of each assay. The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in large-sized samples. Mercatelli, D. and Giorgi, F. M. (2020) .


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0.1.3 by Shaoqian Ma, a year ago

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Authors: Shaoqian Ma [aut, cre] , Yongyou Zhang [aut]

Documentation:   PDF Manual  

Artistic-2.0 license

Imports ggplot2, cowplot, seqinr, stringr, grDevices, graphics, utils, ggpubr, dplyr, VennDiagram

Suggests testthat

See at CRAN