Protein Quantification in Mass Spectrometry-Based Proteomics
An implementation of the maximal
peptide ratio extraction module of the MaxLFQ algorithm by
Cox et al. (2014) in a complete
pipeline for processing proteomics data in data-independent acquisition mode
(Pham et al. 2020 ).
It offers additional options for protein quantification using the N most intense
fragment ions, using all
fragment ions, and a wrapper for the median polish algorithm by Tukey (1977, ISBN:0201076160).