Protein Quantification in Mass Spectrometry-Based Proteomics

An implementation of the maximal peptide ratio extraction module of the MaxLFQ algorithm by Cox et al. (2014) in a complete pipeline for processing proteomics data in data-independent acquisition mode. It offers additional options for protein quantification using the N most intense fragment ions, using all fragment ions, and a wrapper for the median polish algorithm by Tukey (1977, ISBN:0201076160).


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install.packages("iq")

1.1 by Thang Pham, 20 days ago


Browse source code at https://github.com/cran/iq


Authors: Thang Pham [aut, cre, cph, ctb] , Alex Henneman [ctb]


Documentation:   PDF Manual  


BSD_3_clause + file LICENSE license


Suggests knitr, rmarkdown


See at CRAN