Create a Bayesian Posterior from a Phylogeny

Theoretical biologists are interested in measuring the extent at which we can measure the truth. This package allows to create a Bayesian posterior from a phylogeny that depicts the true evolutionary relationships. The given and true phylogeny can than be compared to the posterior phylogenies. Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020) "Quantifying the impact of an inference model in Bayesian phylogenetics" .


Reference manual

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install.packages("pirouette")

1.6.9 by Richèl J.C. Bilderbeek, 3 years ago


https://github.com/richelbilderbeek/pirouette/


Report a bug at https://github.com/richelbilderbeek/pirouette/issues


Browse source code at https://github.com/cran/pirouette


Authors: Richèl J.C. Bilderbeek [aut, cre] , Giovanni Laudanno [aut] , Thijs Janzen [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports ape, beautier, beastier, babette, DDD, forcats, magrittr, mauricer, mcbette, nodeSub, phangorn, phytools, plyr, pryr, readr, stringr, TESS, tibble, tidyr, tracerer, xtable

Suggests devtools, dplyr, ggplot2, knitr, lintr, markdown, nLTT, rappdirs, rmarkdown, Rmpfr, testthat

System requirements: BEAST2 (https://www.beast2.org/)


See at CRAN