Visualising Single-Cell Trajectories

Visualise a single-cell trajectory as a graph or dendrogram, as a dimensionality reduction or heatmap of the expression data, or a comparison between two trajectories as a pairwise scatterplot or dimensionality reduction projection. Saelens and Cannoodt et al. (2019) .


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1.1.1 by Robrecht Cannoodt, 4 months ago

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Authors: Robrecht Cannoodt [aut, cre, cph] , Wouter Saelens [aut]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports assertthat, dplyr, dynutils, dynfeature, dyndimred, dynwrap, GA, ggforce, ggplot2, ggraph, ggrepel, igraph, MASS, methods, patchwork, purrr, reshape2, tibble, tidyr, tidygraph, vipor

Suggests covr, hexbin, knitr, RColorBrewer, rje, rmarkdown, testthat, uwot

See at CRAN