A Fast and Light Package to Compute Polygenic Risk Scores

Quickly computes polygenic scores from GWAS summary statistics of either case-control or quantitative traits, without LD matrix computation or parameter tuning. Reales,G., Kelemen,M., Wallace,C. (2020) "R√°pidoPGS: A rapid polygenic score calculator for summary GWAS data without validation dataset".


Reference manual

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1.0.2 by Guillermo Reales, 10 months ago

Browse source code at https://github.com/cran/RapidoPGS

Authors: Guillermo Reales [aut, cre] , Chris Wallace [aut] , Olly Burren [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports GenomicRanges, IRanges, bigsnpr

Depends on data.table, RCurl, curl

Suggests knitr, rmarkdown

See at CRAN