UK Biobank Data Processing and Survival Analysis Toolkit

Provides an integrated workflow for UK Biobank Research Analysis Platform (RAP) hosted and RAP-generated analysis tables. The package supports RAP phenotype extraction planning, predefined variable sets and disease definitions, standardized baseline preprocessing, multi-source endpoint ascertainment, prevalent and incident case classification, survival-ready cohort construction, regression, multiple imputation, propensity score analysis, mediation analysis, subgroup and sensitivity analyses, machine learning, proteomics enrichment and protein-protein interaction analysis, and publication-oriented visualization. The package workflow is described in He et al. (2026) .


Reference manual

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