A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Provides a graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, including gene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly' and 'polyqtlR' packages.


Reference manual

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0.1.1 by Cristiane Taniguti, 16 days ago


Report a bug at https://github.com/mmollina/viewpoly/issues

Browse source code at https://github.com/cran/viewpoly

Authors: Cristiane Taniguti [aut, cre] , Gabriel Gesteira [aut] , Jeekin Lau [ctb] , Guilherme Pereira [ctb] , David Byrne [ctb] , Zhao-Bang Zeng [ctb] , Oscar Riera-Lizarazu [ctb] , Marcelo Mollinari [aut]

Documentation:   PDF Manual  

GPL-3 license

Imports shiny, shinyjs, shinythemes, shinyWidgets, shinydashboard, config, golem, JBrowseR, dplyr, tidyr, DT, ggplot2, ggpubr, plotly, vroom, abind, reshape2, markdown, stats, rlang

Suggests testthat

See at CRAN