Interface to the 'g:Profiler' Toolset

A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<>). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.

An R interface corresponding to the 2019 update of g:Profiler web tool.


Reference manual

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0.1.1 by Liis Kolberg, a day ago

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Authors: Liis Kolberg <[email protected]> , Uku Raudvere <[email protected]>

Documentation:   PDF Manual  

GPL (>= 2) license

Imports jsonlite, RCurl, ggplot2, plotly, tidyr, crosstalk, plyr, grDevices, gridExtra, grid, viridisLite, dplyr

See at CRAN