Interface to the 'g:Profiler' Toolset

A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (< https://biit.cs.ut.ee/gprofiler/>). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects. This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.


Reference manual

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install.packages("gprofiler2")

0.2.4 by Liis Kolberg, a year ago


Report a bug at https://biit.cs.ut.ee/gprofiler/page/contact


Browse source code at https://github.com/cran/gprofiler2


Authors: Liis Kolberg [aut, cre] , Uku Raudvere [aut]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports jsonlite, RCurl, ggplot2, plotly, tidyr, crosstalk, grDevices, gridExtra, grid, viridisLite, dplyr, curl

Suggests knitr, rmarkdown, prettydoc


Imported by ClustAssess, DFD, UniprotR, scMappR.

Suggested by diffwrap, rliger.


See at CRAN