Template Model Builder: A General Random Effect Tool Inspired by 'ADMB'

With this tool, a user should be able to quickly implement complex random effect models through simple C++ templates. The package combines 'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through 'BLAS' and parallel user templates.


Reference manual

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install.packages("TMB")

1.9.25 by Kasper Kristensen, a month ago


https://github.com/kaskr/adcomp/wiki


Report a bug at https://github.com/kaskr/adcomp/issues


Browse source code at https://github.com/cran/TMB


Authors: Kasper Kristensen [aut, cre, cph] , Brad Bell [cph] , Hans Skaug [ctb] , Arni Magnusson [ctb] , Casper Berg [ctb] , Anders Nielsen [ctb] , Martin Maechler [ctb] , Theo Michelot [ctb] , Mollie Brooks [ctb] , Alex Forrence [ctb] , Christoffer Moesgaard Albertsen [ctb] , Cole Monnahan [ctb]


Documentation:   PDF Manual  


GPL-2 license


Imports graphics, methods, stats, utils, Matrix

Suggests numDeriv, parallel

Linking to Matrix, RcppEigen


Imported by ALDEx3, ASMbook, AgePopDenom, BayesGP, DAST, FRK, GeoAdjust, LocalCop, MLBC, MLZ, QFASA, RTMB, SAMtool, SpatialGEV, bage, beezdemand, clustTMB, ctsmTMB, disaggregation, drmTMB, dsem, dtametaTMB, ecostate, epigrowthfit, fb4package, fishmethods, freqTLS, gadget3, gkwreg, glmmTMB, marked, mmrm, multiSA, plantmix, qbrms, sdmTMB, ssdtools, stelfi, stochvolTMB, tinyVAST, tmbstan, tramME, tsdistributions, tsgarch, tsissm, unmarked, wnpmle.

Depended on by ef, gllvm, hmmTMB, phylosem.

Suggested by EpiNova, MSEtool, RTMBdist, adnuts, autoslider.core, broom.mixed, covafillr, insight, parameters, sjPlot, tern.mmrm.


See at CRAN