Markov Chain Monte Carlo (MCMC) Package

Contains functions to perform Bayesian inference using posterior simulation for a number of statistical models. Most simulation is done in compiled C++ written in the Scythe Statistical Library Version 1.0.3. All models return 'coda' mcmc objects that can then be summarized using the 'coda' package. Some useful utility functions such as density functions, pseudo-random number generators for statistical distributions, a general purpose Metropolis sampling algorithm, and tools for visualization are provided.


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// MCMCpack README //
/////////////////////

// Authors

Andrew D. Martin <[email protected]>
Kevin M. Quinn <[email protected]>
Jong Hee Park <[email protected]>

// Compilation

This package (along with Scythe) uses C++ and the Standard Template
Library (STL).  We suggest using of the GCC compiler 4.0 or greater.  The
current package has been tested using GCC 4.0 on Linux and MacOS X. 

Many thanks to Dan Pemstein for helping with all sorts of C++ issues,
and to Kurt Hornik and Fritz Leisch for their help with debugging as
well as their service to the R community.  We are also very grateful to
Brian Ripley who provided C++ patches to fix a number of clang and Solaris
issues. 

// Acknowledgments

We gratefully acknowledge support from:

* National Science Foundation, Program in Methodology, Measurement, and 
Statistics, Grants SES-0350646 and SES-0350613

* Washington University, Department of Political Science, the
Weidenbaum Center on the Economy, Government, and Public Policy
(http://wc.wustl.edu), and the Center for Empirical Research in the Law
(http://cerl.wustl.edu)

* Harvard University, Department of Government and the
Institute for Quantitative Social Sciences (http://iq.harvard.edu)

Neither the National Science Foundation, Washington University, or
Harvard University bear any responsibility for the content of this
package.

Please contact Jong Hee Park <[email protected]> if
you have any problems or questions.

--
Jong Hee Park, Ph.D.
Professor in Dept. Political Science and International Relations
Seoul National University

Email: [email protected]
WWW: http://jhp.snu.ac.kr

Reference manual

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install.packages("MCMCpack")

1.7-1 by Jong Hee Park, 2 years ago


https://CRAN.R-project.org/package=MCMCpack


Browse source code at https://github.com/cran/MCMCpack


Authors: Andrew D. Martin [aut] , Kevin M. Quinn [aut] , Jong Hee Park [aut, cre] , Ghislain Vieilledent [ctb] , Michael Malecki [ctb] , Matthew Blackwell [ctb] , Keith Poole [ctb] , Craig Reed [ctb] , Ben Goodrich [ctb] , Qiushi Yu [ctb] , Ross Ihaka [cph] , The R Development Core Team [cph] , The R Foundation [cph] , Pierre L'Ecuyer [cph] , Makoto Matsumoto [cph] , Takuji Nishimura [cph]


Documentation:   PDF Manual  


GPL-3 license


Imports graphics, grDevices, lattice, methods, utils, mcmc, quantreg

Depends on coda, MASS, stats

System requirements: gcc (>= 4.0)


Imported by AgriDiversiX, BCClong, BHAI, BMRMM, BSTFA, BSTZINB, Bayenet, BayesDissolution, BayesLCA, BayesMFSurv, BayesTSM, Bergm, CARBayes, CARBayesST, ConsReg, DPComb, FAVAR, Hmsc, MBSGS, MBSP, MCPAN, MixSIAR, NMADTA, NVCSSL, ProfileGLMM, Rdta, SensMap, StReg, SurrogateBMA, VARshrink, adaptsmoFMRI, adsoRptionMCMC, alpmixBayes, apollo, bartcs, bayesDP, bayesanova, bayesmove, bayesmsm, bayest, bgumbel, bmco, bmet, bmstdr, ccpsyc, clickb, coarseDataTools, dsp, evolqg, ezECM, factor.switching, fdrDiscreteNull, fungible, gJLS2, iClusterVB, lchemix, lsirm12pl, mHMMbayes, maxcombo, mbsts, midas2, miscF, mixAR, mmcmcBayes, multilevelmediation, mvst, noncomplyR, optDesignSlopeInt, poolHelper, popdemo, prolsirm, qgg, quid, rACMEMEEV, riAFTBART, scorematchingad, sectorgap, sizeMat, sorocs, spikeSlabGAM, ssmsn, telescope.

Depended on by BayesESS, CoinMinD, NetworkChange, PICBayes, anominate, bacr, brxx, pCalibrate, twl, uskewFactors.

Suggested by BayesPostEst, BetaDanish, MCMCglmm, MultiBD, Racmacs, bridgesampling, dyn, emIRT, fido, frontier, greta, int3ract, ivdoctr, markovchain, multiocc, pscl, pumBayes, qmethod, vibass.

Enhanced by emmeans.


See at CRAN