A Pipeline for Microbiome Analysis and Visualization

A reliable alternative to popular microbiome analysis R packages. We provide standard tools as well as novel extensions on standard analyses to improve interpretability and the analyst’s ability to communicate results, all while maintaining object malleability to encourage open source collaboration.


Reference manual

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1.47 by Charlie Carpenter, a year ago

Report a bug at https://github.com/CharlieCarpenter/tidyMicro

Browse source code at https://github.com/cran/tidyMicro

Authors: Charlie Carpenter [aut, cre] , Dan Frank [aut] , Kayla Williamson [aut] , Rachel Johnson [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports magrittr, ggrepel, MASS, VGAM, rlang, car, lme4, vegan, Matrix, cowplot, lsr, shapes, Evomorph, ThreeWay, factoextra, ade4, scatterplot3d, gridExtra, plotly, png, latex2exp, broom, plyr, dplyr, ggplot2, purrr, stringr, tibble, tidyr, scales

Depends on tidyverse

Suggests knitr, markdown, roxygen2, rmarkdown, testthat

See at CRAN