A Pipeline for Microbiome Analysis and Visualization

A reliable alternative to popular microbiome analysis R packages. We provide standard tools as well as novel extensions on standard analyses to improve interpretability and the analyst’s ability to communicate results, all while maintaining object malleability to encourage open source collaboration.


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Reference manual

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install.packages("tidyMicro")

1.43 by Charlie Carpenter, 4 months ago


Report a bug at https://github.com/CharlieCarpenter/tidyMicro


Browse source code at https://github.com/cran/tidyMicro


Authors: Charlie Carpenter [aut, cre] , Dan Frank [aut] , Kayla Williamson [aut] , Rachel Johnson [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports magrittr, ggrepel, MASS, VGAM, rlang, car, lme4, vegan, Matrix, cowplot, lsr, shapes, Evomorph, ThreeWay, factoextra, ade4, scatterplot3d, gridExtra, plotly, png, latex2exp, broom, plyr, dplyr, ggplot2, purrr, stringr, tibble, tidyr, scales

Depends on tidyverse

Suggests knitr, markdown, roxygen2, rmarkdown


See at CRAN