strataG
Summaries and Population Structure Analyses of Genetic Data
A toolkit for analyzing stratified population genetic data.
Functions are provided for summarizing and checking loci
(haploid, diploid, and polyploid), single stranded DNA sequences,
calculating most population subdivision metrics, and running external programs
such as structure and fastsimcoal. The package is further described in
Archer et al (2016)
Description
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
Installation
To install the stable version (v. 1.0.4) from CRAN:
install.packages('strataG')
To install the latest version from GitHub:
# make sure you have Rtools installedif (!require('devtools')) install.packages('devtools')# install from GitHubdevtools::install_github('ericarcher/strataG', build_vignettes = TRUE)
Contact
- submit suggestions and bug-reports: https://github.com/ericarcher/strataG/issues
- send a pull request: https://github.com/ericarcher/strataG/
- e-mail: eric.archer@noaa.gov
You can see the most recent changes to the package in the NEWS.md file: https://github.com/EricArcher/strataG/blob/master/NEWS.md