Digital PCR Analysis

Analysis, visualisation and simulation of digital polymerase chain reaction (dPCR). Supports data formats of commerical systems (Bio-Rad QX100 and QX200; Fluidigm BioMark) and other systems.


Analysis, visualisation and simulation of digital PCR experiments.

dpcR is available on CRAN, so installation is as simple as:

install.packages("dpcR")

You can install the latest development version of the code using the devtools R package.

# Install devtools, if you haven't already.
install.packages("devtools")
 
library(devtools)
install_github("michbur/dpcR")

dpcReport - standalone GUI

The dpcReport GUI may be downloaded a standalone application (does not require prior installation of R) from SourceForge.

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Reference manual

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install.packages("dpcR")

0.4 by Michal Burdukiewicz, 3 months ago


https://github.com/michbur/dpcR


Report a bug at https://github.com/michbur/dpcR/issues


Browse source code at https://github.com/cran/dpcR


Authors: Michal Burdukiewicz [cre, aut], Stefan Roediger [aut], Bart Jacobs [aut], Piotr Sobczyk [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports binom, chipPCR, e1071, evd, dgof, multcomp, qpcR, pracma, rateratio.test, readxl, signal, shiny, spatstat

Depends on methods

Suggests digest, DT, ggplot2, knitr, markdown, rhandsontable, rmarkdown, shinythemes, xtable


See at CRAN