Liquid Chromatography/Mass Spectrometry (LC/MS) Quality Assessment

The goal of 'LCMSQA' is to make it easy to check the quality of liquid chromatograph/mass spectrometry (LC/MS) experiments using a 'shiny' application. This package provides interactive data visualizations for quality control (QC) samples, including total ion current chromatogram (TIC), base peak chromatogram (BPC), mass spectrum, extracted ion chromatogram (XIC), and feature detection results from internal standards or known metabolites.


LCMSQA

R-CMD-check

The goal of LCMSQA is to make it easy to check the quality of LC/MS experiments using a Shiny application. This package provides interactive data visualizations for quality control (QC) samples, including total ion current chromatogram (TIC), base peak chromatogram (BPC), mass spectrum, extracted ion chromatogram (XIC), and feature detection results from internal standards or known metabolites.

To install this package,

install.packages("LCMSQA")

Reference manual

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install.packages("LCMSQA")

1.0.2 by Jaehyun Joo, 3 years ago


Browse source code at https://github.com/cran/LCMSQA


Authors: Jaehyun Joo [aut, cre] , Blanca Himes [aut]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports bsplus, data.table, DT, ggplot2, methods, plotly, shiny, shinycssloaders, shinyjs, shinyWidgets

Suggests BiocManager, xcms, MSnbase, knitr, rmarkdown


See at CRAN