Sets up and executes a SelAC model (Selection on Amino acids and codons) for testing the presence of selection in amino acid or codon among a set of genes on a fixed phylogeny. Beaulieu et al (2019) .
Model by O'Meara, Beaulieu, Chai, and Gilchrist for SELection on Amino acids and/or Codons
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Jeremy Beaulieu, 3 months ago
Browse source code at
Jeremy Beaulieu [aut, cre]
JJ Chai [aut]
Mike Gilchrist [aut]
Cedric Landerer [aut]
Graham Derryberry [aut]
Brian O'Meara [aut]
Imports ape, deSolve, nloptr, nnet, data.table, expm, MASS, Matrix, methods, parallel, phangorn, seqinr, statmod, zoo, RColorBrewer
Suggests testthat, igraph
See at CRAN