selac

Selection Models for Amino Acid and/or Codon Evolution

Sets up and executes a SelAC model (Selection on Amino acids and codons) for testing the presence of selection in amino acid or codon among a set of genes on a fixed phylogeny. Beaulieu et al (2019) .

Build Status

Model by O'Meara, Beaulieu, Chai, and Gilchrist for SELection on Amino acids and/or Codons

News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.
install.packages("selac")

1.7.0 by Jeremy Beaulieu, 3 months ago

Browse source code at https://github.com/cran/selac

Authors: Jeremy Beaulieu [aut, cre] , JJ Chai [aut] , Mike Gilchrist [aut] , Cedric Landerer [aut] , Graham Derryberry [aut] , Brian O'Meara [aut]

Documentation:   PDF Manual  

GPL license

Imports ape, deSolve, nloptr, nnet, data.table, expm, MASS, Matrix, methods, parallel, phangorn, seqinr, statmod, zoo, RColorBrewer

Suggests testthat, igraph

See at CRAN

R links

R homepage

Download R

Mailing lists

R documentation

R manuals

R FAQs

The R Journal

CRAN links

CRAN homepage

CRAN repository policy

Submit a package

METACRAN stuff

About METACRAN

At github

Report a bug