robis
Ocean Biogeographic Information System (OBIS) Client
Client for the Ocean Biogeographic Information System (< http://iobis.org>). Includes functions for each of the API methods, including searching for occurrences, creating a checklist, searching for datasets and for visualizing the results.
R client for the OBIS API
Installation
# CRANinstall.packages("robis") # latest development versioninstall.packages("devtools")devtools::install_github("iobis/robis")Occurrence
Get occurrences by scientific name:
data <- occurrence("Abra alba")Get occurrences by AphiaID:
data <- occurrence(aphiaid = 141433)Restrict fields in result set:
data <- occurrence("Abra alba", fields = c("decimalLongitude", "decimalLatitude"))Filter occurrences by QC flags:
data <- occurrence("Abra nitida", qc = c(22, 23))Get occurrences by geometry:
data <- occurrence("Abra alba", geometry = "POLYGON ((2.59689 51.16772, 2.62436 51.14059, 2.76066 51.19225, 2.73216 51.20946, 2.59689 51.16772))")Plot occurrences on a Leaflet map:
leafletmap(data)Checklist
Get a checklist for a specific group and year:
data <- checklist("Semelidae", year = 2005)Get a checklist for a region:
data <- checklist(geometry = "POLYGON ((2.59689 51.16772, 2.62436 51.14059, 2.76066 51.19225, 2.73216 51.20946, 2.59689 51.16772))")Dataset
Get dataset information by dataset ID:
datasets <- dataset(seq(2500, 2520))News
robis 1.0.1
Minor bug fixes release.
robis 1.0.0
Initial release of the robis package on CRAN.