Ocean Biogeographic Information System (OBIS) Client

Client for the Ocean Biogeographic Information System (< https://obis.org>).


CRAN robis Travis-CI Build Status Coverage Status DOI

R client for the OBIS API

Installation

# CRAN
install.packages("robis")
 
# latest development version
install.packages("devtools")
devtools::install_github("iobis/robis")

Occurrence

Get occurrences by scientific name:

records <- occurrence("Abra alba")

Get occurrences by AphiaID:

records <- occurrence(taxonid = 141433)

Get occurrences by geometry:

records <- occurrence("Abra alba", geometry = "POLYGON ((2.59689 51.16772, 2.62436 51.14059, 2.76066 51.19225, 2.73216 51.20946, 2.59689 51.16772))")

Plot occurrences on a Leaflet or ggplot2 map:

map_leaflet(records)
map_ggplot(records)

Checklist

Get a checklist for a taxonomic group:

taxa <- checklist("Semelidae")

Get a checklist for a region:

taxa <- checklist(geometry = "POLYGON ((2.59689 51.16772, 2.62436 51.14059, 2.76066 51.19225, 2.73216 51.20946, 2.59689 51.16772))")

News

robis 2.1.0

Added dataset(), area(), and node().

robis 2.0.0

This is a major release which links robis to the new OBIS data system released in January 2019.

Reference manual

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install.packages("robis")

2.1.8 by Pieter Provoost, 3 months ago


https://github.com/iobis/robis


Report a bug at https://github.com/iobis/robis/issues


Browse source code at https://github.com/cran/robis


Authors: Pieter Provoost [cre, aut] , Samuel Bosch [aut] , Ward Appeltans [ctb] , OBIS [cph]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports httr, dplyr, jsonlite, leaflet, ggplot2

Suggests testthat


See at CRAN