Inference Tool for Antibody Haplotype

Infers V-D-J haplotypes and gene deletions from AIRR-seq data, based on IGHJ, IGHD or IGHV as anchor, by adapting a Bayesian framework. It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene. Citation: Gidoni, et al (2019) .


Reference manual

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install.packages("rabhit") by Ayelet Peres, 9 days ago

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Browse source code at

Authors: Ayelet Peres [aut, cre] , Moriah Gidoni [aut] , Gur Yaari [aut, cph]

Documentation:   PDF Manual  

CC BY-SA 4.0 license

Imports dplyr, reshape2, plotly, gtools, cowplot, stats, dendextend, data.table, ggdendro, gridExtra, alakazam, tigger, methods, htmlwidgets, gtable, grDevices, rlang, RColorBrewer, tidyr

Depends on ggplot2

Suggests knitr, rmarkdown

See at CRAN