Compute, Handle, Plot and Model Incidence of Dated Events

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (< https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.


Reference manual

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install.packages("incidence")

1.7.6 by Tim Taylor, a year ago


https://www.repidemicsconsortium.org/incidence/


Report a bug at https://github.com/reconhub/incidence/issues


Browse source code at https://github.com/cran/incidence


Authors: Thibaut Jombart [aut] , Zhian N. Kamvar [aut] , Rich FitzJohn [aut] , Tim Taylor [cre] , Jun Cai [ctb] , Sangeeta Bhatia [ctb] , Jakob Schumacher [ctb] , Juliet R.C. Pulliam [ctb] (ORCID:


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports ggplot2, aweek

Suggests magrittr, outbreaks, testthat, vdiffr, knitr, rmarkdown, scales, cowplot


Imported by EpiEstim, ViroReportR, epiCo, projections.

Suggested by earlyR, epitrix, outbreaks.


See at CRAN