Project Future Case Incidence

Provides functions and graphics for projecting daily incidence based on past incidence, and estimates of the serial interval and reproduction number. Projections are based on a branching process using a Poisson-distributed number of new cases per day, similar to the model used for estimating R in 'EpiEstim' or in 'earlyR', and described by Nouvellet et al. (2017) . The package provides the S3 class 'projections' which extends 'matrix', with accessors and additional helpers for handling, subsetting, merging, or adding these objects, as well as dedicated printing and plotting methods.


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("projections")

0.6.1 by Thibaut Jombart, 2 years ago


https://www.repidemicsconsortium.org/projections/


Report a bug at https://github.com/reconhub/projections/issues


Browse source code at https://github.com/cran/projections


Authors: Thibaut Jombart [aut, cre] , Pierre Nouvellet [aut] , Sangeeta Bhatia [ctb] , Zhian N. Kamvar [ctb] , Tim Taylor [ctb] , Stephane Ghozzi [ctb]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports stats, utils, incidence, ggplot2, methods

Suggests testthat, roxygen2, knitr, rmarkdown, outbreaks, magrittr, distcrete, svglite, EpiEstim


Imported by ViroReportR.

Suggested by earlyR.


See at CRAN