Plot Multiple Sequence Alignment using 'ggplot2'

Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.


Reference manual

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0.0.6 by Guangchuang Yu, 3 months ago

Browse source code at

Authors: Guangchuang Yu [aut, cre] , Lang Zhou [aut] , Huina Huang [ctb]

Documentation:   PDF Manual  

Artistic-2.0 license

Imports Biostrings, ggplot2, magrittr, tidyr, utils, stats, stringr, aplot, RColorBrewer

Suggests ape, cowplot, ggtree, knitr, methods, prettydoc, rmarkdown, seqmagick

See at CRAN