Plot Multiple Sequence Alignment using 'ggplot2'

Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


0.0.4 by Guangchuang Yu, 4 months ago

Browse source code at

Authors: Guangchuang Yu [aut, cre] , Lang Zhou [aut] , Huina Huang [ctb]

Documentation:   PDF Manual  

Artistic-2.0 license

Imports Biostrings, ggplot2, magrittr, tidyr, utils, stats, stringr

Suggests ape, cowplot, ggtree, knitr, methods, seqmagick

See at CRAN