Plot Multiple Sequence Alignment using 'ggplot2'

Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("ggmsa")

0.0.1 by Guangchuang Yu, 2 months ago


Browse source code at https://github.com/cran/ggmsa


Authors: Guangchuang Yu [aut, cre] , Lang Zhou [aut] , Huina Huang [ctb]


Documentation:   PDF Manual  


Artistic-2.0 license


Imports ggplot2, ggseqlogo, magrittr, tidyr, treeio, utils

Suggests Biostrings


See at CRAN