Plot Multiple Sequence Alignment using 'ggplot2'

Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.


Reference manual

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1.0.2 by Guangchuang Yu, 2 days ago

Browse source code at

Authors: Guangchuang Yu [aut, cre] , Lang Zhou [aut] , Shuangbin Xu [ctb] , Huina Huang [ctb]

Documentation:   PDF Manual  

Artistic-2.0 license

Imports Biostrings, ggplot2, magrittr, tidyr, utils, stats, stringr, aplot, RColorBrewer, ggalt, ggforce, methods, dplyr, R4RNA

Suggests ggtreeExtra, ggtree, ape, cowplot, knitr, prettydoc, rmarkdown, seqmagick, readxl, ggnewscale, kableExtra, gggenes

See at CRAN