Plot Multiple Sequence Alignment using 'ggplot2'

Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("ggmsa")

1.0.2 by Guangchuang Yu, 2 days ago


Browse source code at https://github.com/cran/ggmsa


Authors: Guangchuang Yu [aut, cre] , Lang Zhou [aut] , Shuangbin Xu [ctb] , Huina Huang [ctb]


Documentation:   PDF Manual  


Artistic-2.0 license


Imports Biostrings, ggplot2, magrittr, tidyr, utils, stats, stringr, aplot, RColorBrewer, ggalt, ggforce, methods, dplyr, R4RNA

Suggests ggtreeExtra, ggtree, ape, cowplot, knitr, prettydoc, rmarkdown, seqmagick, readxl, ggnewscale, kableExtra, gggenes


See at CRAN