Sequence Manipulation Utilities

Supports reading and writing sequences for different formats (currently interleaved and sequential formats for 'FASTA' and 'PHYLIP'), file conversion, and manipulation (e.g. filter sequences that contain specify pattern, export consensus sequence from an alignment).


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install.packages("seqmagick")

0.1.4 by Guangchuang Yu, 9 days ago


https://github.com/YuLab-SMU/seqmagick


Report a bug at https://github.com/YuLab-SMU/seqmagick/issues


Browse source code at https://github.com/cran/seqmagick


Authors: Guangchuang Yu [aut, cre]


Documentation:   PDF Manual  


Artistic-2.0 license


Imports Biostrings, magrittr, utils

Suggests downloader, knitr, GenomicAlignments, GenomicRanges, IRanges, muscle, Rsamtools, prettydoc


Suggested by ggmsa.


See at CRAN