Sequence Manipulation Utilities

Supports reading and writing sequences for different formats (currently interleaved and sequential formats for 'FASTA' and 'PHYLIP'), file conversion, and manipulation (e.g. filter sequences that contain specify pattern, export consensus sequence from an alignment).


Reference manual

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0.1.5 by Guangchuang Yu, 9 months ago

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Authors: Guangchuang Yu [aut, cre]

Documentation:   PDF Manual  

Artistic-2.0 license

Imports Biostrings, magrittr, utils

Suggests downloader, knitr, rmarkdown, GenomicAlignments, GenomicRanges, IRanges, muscle, Rsamtools, prettydoc

See at CRAN