Prediction of Antimicrobial Peptides

Predicts antimicrobial peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI. The AmpGram model is too large for CRAN and it has to be downloaded separately from the repository: <>.


Reference manual

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1.0 by Michal Burdukiewicz, a year ago

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Authors: Michal Burdukiewicz [cre, aut] , Katarzyna Sidorczuk [ctb] , Filip Pietluch [ctb] , Dominik Rafacz [aut] , Stefan Roediger [ctb] , Jaroslaw Chilimoniuk [ctb]

Documentation:   PDF Manual  

GPL-3 license

Imports biogram, devtools, pbapply, ranger, shiny, stringi

Suggests DT, ggplot2, pander, rmarkdown, shinythemes, spelling

See at CRAN