A C++11 Interface for R's C Interface

Provides a header only, C++11 interface to R's C interface. Compared to other approaches 'cpp11' strives to be safe against long jumps from the C API as well as C++ exceptions, conform to normal R function semantics and supports interaction with 'ALTREP' vectors.

Coalescent-Based Simulation of Ecological Communities

Coalescent-Based Simulation of Ecological Communities as proposed by Munoz et al. (2017) . The package includes a tool for estimating parameters of community assembly by using Approximate Bayesian Computation.

Biodiversity Assessment Tools

Includes algorithms to assess alpha and beta diversity in all their dimensions (taxonomic, phylogenetic and functional). It allows performing a number of analyses based on species identities/abundances, phylogenetic/functional distances, trees, convex-hulls or kernel density n-dimensional hypervolumes depicting species relationships. Cardoso et al. (2015) .

Data Only: Tools for Approximate Bayesian Computation (ABC)

Contains data which are used by functions of the 'abc' package.

Manipulations of Triangular Meshes Based on the 'VCGLIB' API

Operations on triangular meshes based on 'VCGLIB'. This package integrates nicely with the R-package 'rgl' to render the meshes processed by 'Rvcg'. The Visualization and Computer Graphics Library (VCG for short) is an open source portable C++ templated library for manipulation, processing and displaying with OpenGL of triangle and tetrahedral meshes. The library, composed by more than 100k lines of code, is released under the GPL license, and it is the base of most of the software tools of the Visual Computing Lab of the Italian National Research Council Institute ISTI < https://vcg.isti.cnr.it/>, like 'metro' and 'MeshLab'. The 'VCGLIB' source is pulled from trunk < https://github.com/cnr-isti-vclab/vcglib> and patched to work with options determined by the configure script as well as to work with the header files included by 'RcppEigen'.

Tools for Eurostat Open Data

Tools to download data from the Eurostat database < https://ec.europa.eu/eurostat> together with search and manipulation utilities.

Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents

Parentage assignment package. Parentage assignment is performed based on observed average Mendelian transmission probability distributions or Exclusion. The main functions of this package are the function APIS_2n(), APIS_3n() and launch_APIShiny(), which perform parentage assignment.

A Lightweight Template for Data Analysis Projects

Creates useful files and folders for data analysis projects and provides functions to manage data, scripts and output files. Also provides a project template for 'Rstudio'.

Hidden Smooth Polynomial Regression for Rupture Detection

Several functions that allow by different methods to infer a piecewise polynomial regression model under regularity constraints, namely continuity or differentiability of the link function. The implemented functions are either specific to data with two regimes, or generic for any number of regimes, which can be given by the user or learned by the algorithm. A paper describing all these methods will be submitted soon. The reference will be added to this file as soon as available.

Calculation of the Integrated Flow of Particles Between Polygons

Calculate the flow of particles between polygons by two integration methods: integration by a cubature method and integration on a grid of points. Annie Bouvier, Kien Kieu, Kasia Adamczyk and Herve Monod (2009) .