Landscape Epidemiology and Evolution

A stochastic, spatially-explicit, demo-genetic model simulating the spread and evolution of a plant pathogen in a heterogeneous landscape to assess resistance deployment strategies. It is based on a spatial geometry for describing the landscape and allocation of different cultivars, a dispersal kernel for the dissemination of the pathogen, and a SEIR ('Susceptible-Exposed-Infectious-Removed’) structure with a discrete time step. It provides a useful tool to assess the performance of a wide range of deployment options with respect to their epidemiological, evolutionary and economic outcomes. Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett, Peter H Thrall (2018) .


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install.packages("landsepi")

1.0.1 by Jean-Francois Rey, 4 months ago


https://gitlab.paca.inra.fr/CSIRO-INRA/landsepi


Report a bug at https://gitlab.paca.inra.fr/CSIRO-INRA/landsepi/issues


Browse source code at https://github.com/cran/landsepi


Authors: Loup Rimbaud [aut] , Julien Papaix [aut] , Jean-Francois Rey [cre] , Jean-Loup Gaussen [ctb]


Documentation:   PDF Manual  


GPL (>= 2) | file LICENSE license


Imports Rcpp, stats, Matrix, mvtnorm, fields, splancs, sf, DBI, RSQLite, foreach, parallel, doParallel

Depends on methods, utils, grDevices, graphics, sp

Suggests testthat, shiny, shinyjs, DT, knitr, rmarkdown

Linking to Rcpp, testthat

System requirements: C++11, gsl


See at CRAN