Visualize Data for Host and Viral Population from 'SMITIDstruct' using HTMLwidgets

Visualisation tools for 'SMITIDstruct' package. Allow to visualize host timeline, transmission tree, index diversities and variant graph using HTMLwidgets. It mainly using D3JS javascript framework.


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Reference manual

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install.packages("SMITIDvisu")

0.0.6 by Jean-Francois Rey, 3 months ago


https://informatique-mia.inra.fr/biosp/anr-smitid-project, https://gitlab.paca.inra.fr/SMITID/visu


Browse source code at https://github.com/cran/SMITIDvisu


Authors: Jean-Francois Rey [aut, cre] , Julien Boge [ctb]


Documentation:   PDF Manual  


GPL (>= 3) | file LICENSE license


Imports Rcpp, htmlwidgets, yaml, jsonlite, magrittr

Depends on utils

Suggests SMITIDstruct, knitr, shiny, testthat

Linking to Rcpp

System requirements: C++11


See at CRAN