Visualize Data for Host and Viral Population from 'SMITIDstruct' using HTMLwidgets

Visualisation tools for 'SMITIDstruct' package. Allow to visualize host timeline, transmission tree, index diversities and variant graph using HTMLwidgets. It mainly using D3JS javascript framework.


Reference manual

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0.0.6 by Jean-Francois Rey, a year ago,

Browse source code at

Authors: Jean-Francois Rey [aut, cre] , Julien Boge [ctb]

Documentation:   PDF Manual  

GPL (>= 3) | file LICENSE license

Imports Rcpp, htmlwidgets, yaml, jsonlite, magrittr

Depends on utils

Suggests SMITIDstruct, knitr, shiny, testthat

Linking to Rcpp

System requirements: C++11

See at CRAN