Feature Set Enrichment Analysis for Metabolomics and Transcriptomics

Methods and feature set definitions for feature or gene set enrichment analysis in transcriptional and metabolic profiling data. Package includes tests for enrichment based on ranked lists of features, functions for visualisation and multivariate functional analysis.



Since creating a dynamic vignette was becoming more and more problematic with the growing examples, I have moved most of its contents to the "tmod User Guide", which can be displayed using the command tmodUserGuide().

Reference manual

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0.46.2 by January Weiner, a year ago


Browse source code at https://github.com/cran/tmod

Authors: January Weiner

Documentation:   PDF Manual  

GPL (>= 2.0) license

Imports beeswarm, tagcloud, XML, methods, plotwidgets, RColorBrewer, gplots, colorDF

Suggests testthat, knitr, rmarkdown, pca3d, R.rsp, dplyr

Imported by disco.

See at CRAN