Fast and Comprehensive K-Mer Counting Package

A fast implementation of k-mer (subsequences of length k) counting with the support for all types of biological sequences and k-mer variants.


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Reference manual

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install.packages("seqR")

1.0.0 by Jadwiga Słowik, 10 days ago


https://github.com/slowikj/seqR


Report a bug at https://github.com/slowikj/seqR/issues


Browse source code at https://github.com/cran/seqR


Authors: Jadwiga Słowik [aut, cre] , Michał Burdukiewicz [ths]


Documentation:   PDF Manual  


GPL (>= 3) license


Imports Matrix, Rcpp, RcppParallel, rlang, slam

Suggests covr, ggplot2, knitr, microbenchmark, pryr, rmarkdown, spelling, testthat

Linking to Rcpp, RcppParallel

System requirements: c++17, GNU make


See at CRAN