A fast implementation of k-mer (subsequences of length k) counting with the support for all types of biological sequences and k-mer variants.
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Jadwiga Słowik, 10 days ago
Report a bug at https://github.com/slowikj/seqR/issues
Browse source code at
Jadwiga Słowik [aut, cre]
Michał Burdukiewicz [ths]
GPL (>= 3)
Imports Matrix, Rcpp, RcppParallel, rlang, slam
Suggests covr, ggplot2, knitr, microbenchmark, pryr, rmarkdown, spelling, testthat
Linking to Rcpp, RcppParallel
System requirements: c++17, GNU make
See at CRAN