Single-Cell Decomposition using Hierarchical Autoencoder

Provides a fast and accurate pipeline for single-cell analyses. The 'scDHA' software package can perform clustering, dimension reduction and visualization, classification, and time-trajectory inference on single-cell data (Tran et.al. (2021) ).


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Reference manual

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install.packages("scDHA")

1.1.2 by Duc Tran, 4 days ago


https://github.com/duct317/scDHA


Report a bug at https://github.com/duct317/scDHA/issues


Browse source code at https://github.com/cran/scDHA


Authors: Duc Tran [aut, cre] , Tin Nguyen [fnd]


Documentation:   PDF Manual  


GPL-3 license


Imports matrixStats, foreach, doParallel, igraph, Matrix, uwot, cluster, clusterCrit, Rcpp, RcppParallel, RcppAnnoy, methods, torch, RhpcBLASctl

Suggests testthat, knitr, mclust

Linking to Rcpp, RcppArmadillo, RcppParallel, RcppAnnoy


Depended on by scCAN.


See at CRAN