Single-Cell Decomposition using Hierarchical Autoencoder

Provides a fast and accurate pipeline for single-cell analyses. The 'scDHA' software package can perform clustering, dimension reduction and visualization, classification, and time-trajectory inference on single-cell data (Tran (2021) ).


Reference manual

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1.1.1 by Duc Tran, 13 days ago

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Authors: Duc Tran [aut, cre] , Tin Nguyen [fnd]

Documentation:   PDF Manual  

GPL-3 license

Imports matrixStats, foreach, doParallel, igraph, Matrix, uwot, cluster, clusterCrit, Rcpp, RcppParallel, RcppAnnoy, methods, torch, RhpcBLASctl

Suggests testthat, knitr, mclust

Linking to Rcpp, RcppArmadillo, RcppParallel, RcppAnnoy

See at CRAN