Single-Cell Decomposition using Hierarchical Autoencoder

Provides a fast and accurate pipeline for single-cell analyses. The 'scDHA' software package can perform clustering, dimension reduction and visualization, classification, and time-trajectory inference on single-cell data (Tran (2021) ).


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


1.1.2 by Duc Tran, 4 months ago

Report a bug at

Browse source code at

Authors: Duc Tran [aut, cre] , Tin Nguyen [fnd]

Documentation:   PDF Manual  

GPL-3 license

Imports matrixStats, foreach, doParallel, igraph, Matrix, uwot, cluster, clusterCrit, Rcpp, RcppParallel, RcppAnnoy, methods, torch, RhpcBLASctl

Suggests testthat, knitr, mclust

Linking to Rcpp, RcppArmadillo, RcppParallel, RcppAnnoy

Depended on by scCAN.

See at CRAN