Creating and Working with Pedigrees and Marker Data

A comprehensive collection of tools for creating, manipulating and visualising pedigrees and genetic marker data. Pedigrees can be read from text files or created on the fly with built-in functions. A range of utilities enable modifications like adding or removing individuals, breaking loops, and merging pedigrees. Pedigree plots are produced by wrapping the plotting functionality of the 'kinship2' package. A Shiny app for creating pedigrees, based on 'pedtools', is available at < https://magnusdv.shinyapps.io/quickped>. 'pedtools' is the hub of the 'ped suite', a collection of packages for pedigree analysis. A detailed presentation of the 'ped suite' is given in the book 'Pedigree Analysis in R' (Vigeland, 2021, ISBN:9780128244302).


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install.packages("pedtools")

1.0.1 by Magnus Dehli Vigeland, 3 months ago


https://github.com/magnusdv/pedtools, https://magnusdv.github.io/pedsuite/


Browse source code at https://github.com/cran/pedtools


Authors: Magnus Dehli Vigeland [aut, cre]


Documentation:   PDF Manual  


GPL-3 license


Imports kinship2

Suggests igraph, kableExtra, knitr, pedmut, rmarkdown, testthat


Depended on by dvir, forrel, ibdsim2, paramlink2, pedbuildr, pedprobr, pedsuite, ribd, segregatr.


See at CRAN