Construction of Genetic Maps in Experimental Crosses

Analysis of molecular marker data from model and non-model systems. For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu and colleagues (2002) . All analysis are based on multi-point approaches using hidden Markov models.


Reference manual

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install.packages("onemap")

3.2.6 by Cristiane Taniguti, 3 months ago


https://github.com/cristianetaniguti/onemap


Report a bug at https://github.com/Cristianetaniguti/onemap/issues


Browse source code at https://github.com/cran/onemap


Authors: Cristiane Taniguti [aut, cre] , Marcelo Mollinari [aut] , Rodrigo Amadeu [ctb] , Getulio Ferreira [ctb] , Gabriel Margarido [aut] , Jeekin Lau [ctb] , Karl Broman [ctb] , Katharine Preedy [ctb, cph] (MDS ordering algorithm) , Bastian Schiffthaler [ctb, cph] (HMM parallelization) , Augusto Garcia [aut, ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports ggplot2, plotly, reshape2, Rcpp, graphics, methods, stats, utils, grDevices, smacof, princurve, parallel, dplyr, tidyr, htmlwidgets, ggpubr, RColorBrewer, dendextend, vcfR

Suggests knitr, rmarkdown, testthat, stringr, gatepoints

Linking to Rcpp


See at CRAN