Genetic Analysis of Multi-Parent Recombinant Inbred Lines

Constructing linkage maps, reconstructing haplotypes, estimating linkage disequilibrium and quantitative trait loci (QTL) mapping in multi-parent Recombinant Inbred Lines designs.


Reference manual

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1.0.3 by Rohan Shah, 3 months ago

Browse source code at

Authors: Rohan Shah [aut, cre] , Emma Huang [aut] , Matthew Morell [ctb] , Alex Whan [ctb] , Colin Cavanagh [ctb]

Documentation:   PDF Manual  

GPL-2 license

Imports ggplot2, Matrix, methods, qtl, igraph, fastcluster, pryr, nnls, RColorBrewer, jsonlite, progress, stats, sn, car

Suggests testthat, knitr, rmarkdown, gridExtra, Heatplus

Linking to Rcpp

System requirements: C++11

See at CRAN