A Clustering Method for Time-Series Whole-Brain Activity Data of 'C. elegans'

A toolkit to detect clusters from distance matrices. The distance matrices are assumed to be calculated between the cells of multiple animals ('Caenorhabditis elegans') from input time-series matrices. Some functions for generating distance matrices, performing clustering, evaluating the clustering, and visualizing the results of clustering and evaluation are available. We're also providing the download function to retrieve the calculated distance matrices from 'figshare' < https://figshare.com>.


Reference manual

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install.packages("WormTensor")

0.1.2 by Kentaro Yamamoto, a year ago


https://github.com/rikenbit/WormTensor


Report a bug at https://github.com/rikenbit/WormTensor/issues


Browse source code at https://github.com/cran/WormTensor


Authors: Kentaro Yamamoto [aut, cre] , Koki Tsuyuzaki [aut] , Itoshi Nikaido [aut]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports rTensor, usedist, dtwclust, clusterSim, clValid, aricode, cluster, ggplot2, Rtsne, uwot, factoextra, ggrepel, cowplot, methods

Suggests knitr, rmarkdown, testthat


See at CRAN