Tools for Imaging Flow Cytometry

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®', part of 'Luminex®'). Provides an easy and simple way to read, write and subset .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository < https://gitdemont.github.io/IFCdata>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("IFC")

0.0.9 by Yohann Demont, 3 months ago


Report a bug at https://github.com/gitdemont/IFC/issues


Browse source code at https://github.com/cran/IFC


Authors: Yohann Demont [aut, cre] , Gautier Stoll [ctb] , Guido Kroemer [ldr] , Jean-Pierre Marolleau [ldr] , Loïc Garçon [ldr]


Documentation:   PDF Manual  


GPL-3 license


Imports Rcpp, RcppProgress, xml2, png, tiff, jpeg, utils, grid, gridExtra, lattice, latticeExtra, KernSmooth, DT, visNetwork

Suggests IFCdata, shiny, reticulate

Linking to Rcpp, RcppProgress


See at CRAN