Tools for Imaging Flow Cytometry

Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®', part of 'Luminex®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.


Reference manual

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0.1.2 by Yohann Demont, 3 months ago

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Authors: Yohann Demont [aut, cre] , Gautier Stoll [ctb] , Guido Kroemer [ldr] , Jean-Pierre Marolleau [ldr] , Loïc Garçon [ldr]

Documentation:   PDF Manual  

GPL-3 license

Imports Rcpp, RcppProgress, xml2, png, tiff, jpeg, utils, grid, gridExtra, lattice, latticeExtra, KernSmooth, DT, visNetwork

Suggests IFCdata, shiny, reticulate

Linking to Rcpp, RcppProgress

See at CRAN