Implements the DeLorean model to estimate pseudotimes for single cell expression data. The DeLorean model uses a Gaussian process latent variable model to model uncertainty in the capture time of cross-sectional data.
R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experiments.
To render the vignettes you will need a working version (> 1.12.3) of
pandoc on your machine with the
pandoc-citeproc filter. On Ubuntu do:
sudo apt-get install pandoc pandoc-citeproc
Just run the following in an
If you prefer to have the very latest version you can install
DeLorean from source.
If you do not already have
installed, then install it by running:
Now you can install the development version of
Read the vignette: