Complementary Genomic Functions

Presents a series of molecular and genetic routines in the R environment with the aim of assisting in analytical pipelines before and after the use of 'asreml' or another library to perform analyses such as Genomic Selection or Genome-Wide Association Analyses. Methods and examples are described in Gezan, Oliveira, Galli, and Murray (2022) < https://asreml.kb.vsni.co.uk/wp-content/uploads/sites/3/ASRgenomics_Manual.pdf>.


ASRgenomics

This package presents a series of molecular and genetic routines in the R environment with the aim of assisting in analytical pipelines before and after use of ASReml-R or another library to perform analyses such as Genomic Selection (GS) or Genome-Wide Association Analyses (GWAS)

Installation

Use the following code to download and install ASRgenomics:

install.packages("ASRgenomics")

Usage

To load the library use:

library(ASRgenomics)

Authors

This package has been developed by the VSN International team (https://vsni.co.uk/)

Developers

Maintenance

Reference manual

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install.packages("ASRgenomics")

1.1.6 by Salvador Gezan, 5 months ago


Browse source code at https://github.com/cran/ASRgenomics


Authors: Salvador Gezan [aut, cre] , Darren Murray [aut] , Amanda Avelar de Oliveira [aut] , Giovanni Galli [aut] , VSN International [cph]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports AGHmatrix, cowplot, crayon, data.table, ellipse, factoextra, ggplot2, Matrix, methods, scattermore, stats, utils

Suggests knitr, rmarkdown, spelling, V8, testthat


See at CRAN