String Distance Calculation with Tidy Data Principles

Calculation of string distance following the tidy data principles. Built on top of the 'stringdist' package.

Expand Tidy Output for Categorical Parameter Estimates

Create additional rows and columns on broom::tidy() output to allow for easier control on categorical parameter estimates.

Tidy Model Visualisation for Generalised Additive Models

Provides functions for visualising generalised additive models and getting predicted values using tidy tools from the 'tidyverse' packages.

Explore 'Wikidata' Through Tidy Data Frames

Query 'Wikidata' API < https://www.wikidata.org/wiki/Wikidata:Main_Page> with ease, get tidy data frames in response, and cache data in a local database.

Tidy Statistical Summaries for Exploratory Data Analysis

Provides a tidy set of functions for summarising data, including descriptive statistics, frequency tables with normality testing, and group-wise significance testing. Designed for fast, readable, and easy exploration of both numeric and categorical data.

Analyze Lines of R Code the Tidy Way

Analyze lines of R code using tidy principles. This allows you to input lines of R code and output a data frame with one row per function included. Additionally, it facilitates code classification via included lexicons.

Converts 'MultiQC' Reports into Tidy Data Frames

Provides the means to convert 'multiqc_data.json' files, produced by the wonderful 'MultiQC' tool, into tidy data frames for downstream analysis in R. This analysis might involve cohort analysis, quality control visualisation, change-point detection, statistical process control, clustering, or any other type of quality analysis.

Tidy Verbs for Dealing with Genomic Data Frames

Handle genomic data within data frames just as you would with 'GRanges'. This packages provides method to deal with genomic intervals the "tidy-way" which makes it simpler to integrate in the the general data munging process. The API is inspired by the popular 'bedtools' and the genome_join() method from the 'fuzzyjoin' package.

Tidy Common Workflow Language Tools and Workflows

The Common Workflow Language < https://www.commonwl.org/> is an open standard for describing data analysis workflows. This package takes the raw Common Workflow Language workflows encoded in JSON or 'YAML' and turns the workflow elements into tidy data frames or lists. A graph representation for the workflow can be constructed and visualized with the parsed workflow inputs, outputs, and steps. Users can embed the visualizations in their 'Shiny' applications, and export them as HTML files or static images.

A Tidy Framework to Hack Gene Expression Signatures

A collection of cancer transcriptomics gene signatures as well as a simple and tidy interface to compute single sample enrichment scores either with the original procedure or with three alternatives: the "combined z-score" of Lee et al. (2008) , the "single sample GSEA" of Barbie et al. (2009) and the "singscore" of Foroutan et al. (2018) . The 'get_sig_info()' function can be used to retrieve information about each signature implemented.