A Tidy Framework to Hack Gene Expression Signatures

A collection of cancer transcriptomics gene signatures as well as a simple and tidy interface to compute single sample enrichment scores either with the original procedure or with three alternatives: the "combined z-score" of Lee et al. (2008) , the "single sample GSEA" of Barbie et al. (2009) and the "singscore" of Foroutan et al. (2018) . The 'get_sig_info()' function can be used to retrieve information about each signature implemented.


Reference manual

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0.1.1 by Andrea Carenzo, 2 months ago


Report a bug at https://github.com/Acare/hacksig/issues

Browse source code at https://github.com/cran/hacksig

Authors: Andrea Carenzo [aut, cre] , Loris De Cecco [aut] , Federico Pistore [aut]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports dplyr, future.apply, rlang, stats, tibble, tidyr

Suggests covr, future, ggplot2, knitr, msigdbr, purrr, rmarkdown

See at CRAN